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The followings are the improvements of this version compared to the previous version:
The improvements of version V3.11 compared to the previous version V3.10 are the following:
The improvements of version V3.10 compared to the previous version V3.004 are the following:
The improvements of version V3.004 compared to the previous version V2.00 are the following:
Category | Software | Versions | References |
---|---|---|---|
Data collection integration reduction scaling averaging |
HKL/HKL2000 SCALEPACK/DENZO | 1.30 , 1.96 , 1.97.9 | Otwinowski & Minor (1997) |
D*trek | 7.0SSI , 7.11 , 9.2 , 9.7 | Pflugrath (1997) | |
SCALA (CCP4) | CCP4(v4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | Evans (1997) | |
XDS/XSCALE | Nov. 2005 , June 2006, Dec. 2006 , Mar. 2007 , July 2007 | Kabsch | |
MOSFLM | 6.2.2 , 6.2.3, 6.2.5, 7.0.1 | Leslie(1998) | |
X-gen | 5.5.5 , 5.8.3 | Andrew J. Howard | |
SAINT | V6.35A, V7.03A | Bruker (2002) | |
3DSCALE/PROSCALE | N/A | Fu (2005) | |
Molecular replacement |
CNS/CNX | 0.9 , 1.0, 1.1 , 1.2 | Brunger et al. (1998) |
XPLOR | 3.1 , 3.851 | Brunger et al (1998) | |
AMORE (CCP4) | CCP4(V4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | Navaza (1994) | |
MOLREP (CCP4) | CCP4(V4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | Vagin & Teplyakov (1997) | |
EPMR | 2.5 | Kissinger et al. (1999) | |
PHASER | 1.2, 1.3 , 2.0 , 2.1 | Read(2001) | |
BEAST | 1.1.1 | Read(2001) | |
COMO | 1.2 | Tong(1996) | |
Heavy atom phase determination |
CNS/CNX | 0.9 , 1.0 , 1.1 , 1.2 | Brunger et al. (1998) |
XPLOR | 3.1 , 3.851 | Brunger et al (1998) | |
SOLVE | 2.0 , 2.01, 2.02, 2.06, 2.08 , 2.09, 2.10, 2.11, 2.13 | Terwilliger & Berendzen. (1999) | |
MLPHARE (CCP4) | CCP4(V4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | CCP4 (1994) | |
SHARP/autoSHARP | 1.3.x , 1.4.0 , 2.0 , 2.01 , 2.04 , 2.2.0 | Fortelle & Bricogne (1997) | |
SHELXD/SHELXS | 97 | Sheldrick (1997) | |
PHASES | 95 | Furey (1997) | |
PHASER | 2.0 , 2.1 | Read(2001) | |
SnB | 2.0 , 2.1 , 2.2 | Weeks & Miller (1999) | |
BnP | 0.93 , 1.0 , 1.02 , 1.05 | Weeks et al. (2002) | |
BP3 | 1.0 | Navraj S. Pannu(2003) | |
Density modification |
CNS/CNX | 0.9 , 1.0 , 1.1 , 1.2 | Brunger et al. (1998) |
XPLOR | 3.1 , 3.851 | Brunger et al (1998) | |
DM (CCP4) | CCP4(v4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | Cowtan (1994) | |
SOLOMON (CCP4) | CCP4(V4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | Abrahams & Leslie (1996) | |
RESOLVE | 2.0 , 2.01, 2.02, 2.06, 2.08 , 2.09, 2.10, 2.11, 2.13 | Terwilliger (2000) | |
SHELXE | 97 | Sheldrick (1997) | |
Structure refinement |
CNS/CNX | 0.9 , 1.0 , 1.1 , 1.2 | Brunger et al. (1998) |
XPLOR | 3.1 , 3.851 | Brunger et al (1998) | |
REFMAC5 (CCP4) | CCP4(V4.0 , 5.0 , 5.01, 5.02 , 6.0 , 6.01 , 6.02) | Murshudov (1997) | |
PHENIX | 1.0 , 1.1a , 1.22a , 1.3.1 , 1.3b | Adams et al (2002) | |
SHELXL | 97 | Sheldrick (1997) | |
TNT | 5F | Tronrud (1997) | |
BUSTER-TNT | 1.0.2 | G.Bricogne (1993) | |
ARP/wARP | 5.0 , 6.1.1 , 7.0 | Lamzin & Wilson, (1997) | |
RESTRAIN (CCP4) | 4.6 | CCP4 (1994) | |
NMR structure determination |
CNS/CNX | 1.1 , 1.2 | Brunger et al. (1998) |
XPLOR | 3.1 , 3.851 | Brunger et al (1998) | |
CYANA | 2.0 | Güntert (1997) | |
Xplor-NIH | 2.13 | G. Marius Clore(2003) |